Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore

Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):592-7. doi: 10.1073/pnas.1013643108. Epub 2010 Dec 27.


Cyclic nucleotide-gated (CNG) channels play an essential role in the visual and olfactory sensory systems and are ubiquitous in eukaryotes. Details of their underlying ion selectivity properties are still not fully understood and are a matter of debate in the absence of high-resolution structures. To reveal the structural mechanism of ion selectivity in CNG channels, particularly their Ca(2+) blockage property, we engineered a set of mimics of CNG channel pores for both structural and functional analysis. The mimics faithfully represent the CNG channels they are modeled after, permeate Na(+) and K(+) equally well, and exhibit the same Ca(2+) blockage and permeation properties. Their high-resolution structures reveal a hitherto unseen selectivity filter architecture comprising three contiguous ion binding sites in which Na(+) and K(+) bind with different ion-ligand geometries. Our structural analysis reveals that the conserved acidic residue in the filter is essential for Ca(2+) binding but not through direct ion chelation as in the currently accepted view. Furthermore, structural insight from our CNG mimics allows us to pinpoint equivalent interactions in CNG channels through structure-based mutagenesis that have previously not been predicted using NaK or K(+) channel models.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacillus cereus / metabolism
  • Bacterial Proteins / chemistry
  • Calcium / chemistry
  • Cattle
  • Humans
  • Ion Channel Gating*
  • Ions / chemistry*
  • Ligands
  • Molecular Sequence Data
  • Mutagenesis
  • Potassium / chemistry
  • Protein Conformation
  • Recombinant Proteins / chemistry
  • Sequence Homology, Amino Acid
  • Sodium / chemistry


  • Bacterial Proteins
  • Ions
  • Ligands
  • Recombinant Proteins
  • Sodium
  • Potassium
  • Calcium

Associated data

  • PDB/3K03
  • PDB/3K06
  • PDB/3K0D