Cyclopropyl and isopropyl derivatives of 11-cis and 9-cis retinals at C-9 and C-13: subtle steric differences with major effects on ligand efficacy in rhodopsin

J Nat Prod. 2011 Mar 25;74(3):383-90. doi: 10.1021/np100744v. Epub 2011 Feb 10.

Abstract

Retinal is the natural ligand (chromophore) of the vertebrate rod visual pigment. It occurs in either the 11-cis (rhodopsin) or the 9-cis (isorhodopsin) configuration. In its evolution to a G protein coupled photoreceptor, rhodopsin has acquired exceptional photochemical properties. Illumination isomerizes the chromophore to the all-trans isomer, which acts as a full agonist. This process is extremely efficient, and there is abundant evidence that the C-9 and C-13 methyl groups of retinal play a pivotal role in this process. To examine the steric limits of the C-9 and C-13 methyl binding pocket of the binding site, we have prepared C-9 and C-13 cyclopropyl and isopropyl derivatives of its native ligands and of α-retinal at C-9. Most isopropyl analogues show very poor binding, except for 9-cis-13-isopropylretinal. Most cyclopropyl derivatives exhibit intermediate binding activity, except for 9-cis-13-cyclopropylretinal, which presents good binding activity. In general, the binding site shows preference for the 9-cis analogues over the 11-cis analogues. In fact, 13-isopropyl-9-cis-retinal acts as a superagonist after illumination. Another surprising finding was that 9-cyclopropylisorhodopsin is more like native rhodopsin with respect to spectral and photochemical properties, whereas 9-cyclopropylrhodopsin behaves more like native isorhodopsin in these aspects.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Cyclopropanes / chemistry*
  • Diterpenes
  • Molecular Conformation
  • Retinal Pigments / chemistry*
  • Retinal Pigments / metabolism
  • Retinaldehyde* / analogs & derivatives
  • Retinaldehyde* / chemistry
  • Retinaldehyde* / metabolism
  • Rhodopsin / chemistry*
  • Rhodopsin / metabolism
  • Rod Cell Outer Segment / drug effects
  • Spectroscopy, Fourier Transform Infrared
  • Stereoisomerism
  • Transducin / drug effects

Substances

  • Cyclopropanes
  • Diterpenes
  • Retinal Pigments
  • isorhodopsin
  • 9-cis-retinal
  • Rhodopsin
  • Transducin
  • Retinaldehyde