Design and synthesis of amidine-type peptide bond isosteres: application of nitrile oxide derivatives as active ester equivalents in peptide and peptidomimetics synthesis

Org Biomol Chem. 2011 May 7;9(9):3421-7. doi: 10.1039/c0ob01193b. Epub 2011 Mar 21.

Abstract

Amidine-type peptide bond isosteres were designed based on the substitution of the peptide bond carbonyl (C=O) group with an imino (C=NH) group. The positively-charged property of the isosteric part resembles a reduced amide-type peptidomimetic. The peptidyl amidine units were synthesized by the reduction of a key amidoxime (N-hydroxyamidine) precursor, which was prepared from nitrile oxide components as an aminoacyl or peptidyl equivalent. This nitrile oxide-mediated C-N bond formation was also used for peptide macrocyclization, in which the amidoxime group was converted to peptide bonds under mild acidic conditions. Syntheses of the cyclic RGD peptide and a peptidomimetic using both approaches, and their inhibitory activity against integrin-mediated cell attachment, are presented.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amidines / chemistry*
  • Amino Acids / chemistry
  • Drug Design*
  • Esters / chemistry*
  • Ions / chemistry
  • Molecular Structure
  • Nitriles / chemistry*
  • Oxides / chemistry*
  • Peptides / chemical synthesis*
  • Peptidomimetics / chemical synthesis*

Substances

  • Amidines
  • Amino Acids
  • Esters
  • Ions
  • Nitriles
  • Oxides
  • Peptides
  • Peptidomimetics