X-ray crystal structure and small-angle X-ray scattering of sheep liver sorbitol dehydrogenase

Acta Crystallogr D Biol Crystallogr. 2011 May;67(Pt 5):440-6. doi: 10.1107/S0907444911007815. Epub 2011 Apr 13.

Abstract

The X-ray crystal structure of sheep liver sorbitol dehydrogenase (slSDH) has been determined using the crystal structure of human sorbitol dehydrogenase (hSDH) as a molecular-replacement model. slSDH crystallized in space group I222 with one monomer in the asymmetric unit. A conserved tetramer that superposes well with that seen in hSDH (despite belonging to a different space group) and obeying the 222 crystal symmetry is seen in slSDH. An acetate molecule is bound in the active site, coordinating to the active-site zinc through a water molecule. Glycerol, a substrate of slSDH, also occupies the substrate-binding pocket together with the acetate designed by nature to fit large polyol substrates. The substrate-binding pocket is seen to be in close proximity to the tetramer interface, which explains the need for the structural integrity of the tetramer for enzyme activity. Small-angle X-ray scattering was also used to identify the quaternary structure of the tetramer of slSDH in solution.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Catalytic Domain
  • Humans
  • L-Iditol 2-Dehydrogenase / chemistry*
  • Liver / enzymology*
  • Models, Molecular
  • Protein Structure, Quaternary
  • Scattering, Small Angle
  • Sheep / metabolism*
  • X-Ray Diffraction

Substances

  • L-Iditol 2-Dehydrogenase

Associated data

  • PDB/3QE3