Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair

EMBO J. 2011 Jun 10;30(14):2881-93. doi: 10.1038/emboj.2011.180.

Abstract

In spite of extensive research, the mechanism by which MutS initiates DNA mismatch repair (MMR) remains controversial. We use atomic force microscopy (AFM) to capture how MutS orchestrates the first step of E. coli MMR. AFM images captured two types of MutS/DNA complexes: single-site binding and loop binding. In most of the DNA loops imaged, two closely associated MutS dimers formed a tetrameric complex in which one of the MutS dimers was located at or near the mismatch. Surprisingly, in the presence of ATP, one MutS dimer remained at or near the mismatch site and the other, while maintaining contact with the first dimer, relocated on the DNA by reeling in DNA, thereby producing expanding DNA loops. Our results indicate that MutS tetramers composed of two non-equivalent MutS dimers drive E. coli MMR, and these new observations now reconcile the apparent contradictions of previous 'sliding' and 'bending/looping' models of interaction between mismatch and strand signal.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • DNA Mismatch Repair / genetics*
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism*
  • DNA, Bacterial / ultrastructure*
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Microscopy, Atomic Force*
  • MutS DNA Mismatch-Binding Protein / chemistry*
  • MutS DNA Mismatch-Binding Protein / genetics
  • MutS DNA Mismatch-Binding Protein / metabolism*
  • Protein Binding
  • Protein Multimerization

Substances

  • DNA, Bacterial
  • Escherichia coli Proteins
  • Adenosine Triphosphate
  • MutS DNA Mismatch-Binding Protein
  • MutS protein, E coli