An initiation signal in the 5' untranslated leader sequence of encephalomyocarditis virus RNA

Biochim Biophys Acta. 1990 Aug 27;1050(1-3):124-8. doi: 10.1016/0167-4781(90)90152-r.

Abstract

A 593 nucleotide fragment of the 5' leader of encephalomyocarditis virus RNA (EMCV-RNA) was linked to the SP6 promoter and inserted upstream of the reporter gene chloramphenicol acetyltransferase (CAT). The presence of the 5'-UTR of EMCV-RNA in the RNA transcripts, made in vitro with the SP6 polymerase, resulted in a strong translational enhancement when tested in the micrococcal nuclease-treated reticulocyte lysate. The transcripts were equally active with or without a 5' methylated capstructure as expected, since EMCV-RNA is one of the mRNAs capable of internal initiation. We searched for a signal in the 5' leader that allows the 43S preinitiation complex to bind internally and localized a hairpin containing a unique nucleotide sequence, CUUUA, present in a domain conserved among cardio- and aphtoviral RNAs. Replacing this sequence into AGCU resulted in a 50% loss of translational activity. A second mutation involving a U-G change in the stem of that hairpin resulted in an almost complete loss of initiation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chloramphenicol O-Acetyltransferase / genetics
  • Cloning, Molecular
  • Encephalomyocarditis virus / genetics*
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Nucleic Acid Conformation
  • Peptide Chain Initiation, Translational*
  • Plasmids
  • Protein Biosynthesis*
  • RNA, Messenger / genetics*
  • RNA, Viral / genetics*
  • Restriction Mapping
  • Reticulocytes / metabolism
  • Trans-Activators / metabolism
  • Transcription, Genetic

Substances

  • RNA, Messenger
  • RNA, Viral
  • Trans-Activators
  • Chloramphenicol O-Acetyltransferase