CSO validator: improving manual curation workflow for biological pathways

Bioinformatics. 2011 Sep 1;27(17):2471-2. doi: 10.1093/bioinformatics/btr395. Epub 2011 Jul 8.

Abstract

Summary: Manual curation and validation of large-scale biological pathways are required to obtain high-quality pathway databases. In a typical curation process, model validation and model update based on appropriate feedback are repeated and requires considerable cooperation of scientists. We have developed a CSO (Cell System Ontology) validator to reduce the repetition and time during the curation process. This tool assists in quickly obtaining agreement among curators and domain experts and in providing a consistent and accurate pathway database.

Availability: The tool is available on http://csovalidator.csml.org.

Contact: masao@hgc.jp.

MeSH terms

  • Databases, Factual
  • Models, Biological*
  • Software*
  • Vocabulary, Controlled*
  • Workflow