Genome-wide expression profiling of hepatic oval cells after partial hepatectomy in rats

Tissue Cell. 2011 Oct;43(5):291-303. doi: 10.1016/j.tice.2011.06.001. Epub 2011 Jul 20.

Abstract

To examine the changes of biological activities in hepatic oval cells (HOCs) elicited by 70% partial hepatectomy (PH) and understand the relationship between this cell and liver regeneration (LR), this study isolated and obtained the high purity HOCs (≥ 95%) from rat regenerating livers, and then monitored gene expression profiling of rat hepatic oval cells following surgical operation. Results showed that there were LR-related 1059 genes. These genes were grossly classified into three groups using a fold change cut-off threshold of three-fold: up-regulation, down-regulation and up/down regulation. Analyses of gene expression patterns combined with gene functional categorization suggested that genes in the categories "nucleic acid metabolism" and "cell cycle" were dominated by up-regulated expression. Genes in the functional groups "cell metabolism" and "oxidation reduction" were significantly enriched in expression pattern characterized by down-regulation. According to above mentioned results, the synchronized induction of DNA replication and cell proliferation-involved genes suggested that the peak of oval cell proliferation might occur between 30 and 36 h post-PH. The amino acid transformation-involved genes were down-regulated at the early phase of LR, which perhaps trigger the storage of those amino acids essential for protein synthesis. Reduced oxidative-reduction activity at early phase might be related to negative influence of surgical operation on its detoxification capacity. Conclusively, the genome-wide transcriptional analysis of oval cells would contribute to our understanding of the nature of LR at cell level.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cell Differentiation
  • Cell Survival
  • Cluster Analysis
  • Down-Regulation
  • Gene Expression Profiling*
  • Gene Expression Regulation
  • Hepatectomy*
  • Hepatocytes / cytology*
  • Hepatocytes / physiology
  • Immunohistochemistry
  • Liver / cytology
  • Liver / physiology
  • Liver Regeneration*
  • Oligonucleotide Array Sequence Analysis
  • Oxidation-Reduction
  • Protein Biosynthesis
  • Rats
  • Rats, Sprague-Dawley
  • Time Factors
  • Up-Regulation

Substances

  • Cell Cycle Proteins