ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data

Genome Biol. 2011 Jul 28;12(7):R69. doi: 10.1186/gb-2011-12-7-r69.

Abstract

RNA-Seq and microarray platforms have emerged as important tools for detecting changes in gene expression and RNA processing in biological samples. We present ExpressionPlot, a software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets. Download and installation instructions, a user's manual, discussion group, and a prototype are available at http://expressionplot.com/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Computational Biology
  • Databases, Genetic
  • Gene Expression Profiling / methods*
  • Humans
  • Internet
  • Oligonucleotide Array Sequence Analysis*
  • Sequence Analysis, RNA / methods*
  • Software*
  • User-Computer Interface