Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7

J Biol Chem. 2011 Sep 30;286(39):34468-78. doi: 10.1074/jbc.M111.283796. Epub 2011 Aug 12.

Abstract

The DNA helicase encoded by gene 4 of bacteriophage T7 assembles on single-stranded DNA as a hexamer of six identical subunits with the DNA passing through the center of the toroid. The helicase couples the hydrolysis of dTTP to unidirectional translocation on single-stranded DNA and the unwinding of duplex DNA. Phe(523), positioned in a β-hairpin loop at the subunit interface, plays a key role in coupling the hydrolysis of dTTP to DNA unwinding. Replacement of Phe(523) with alanine or valine abolishes the ability of the helicase to unwind DNA or allow T7 polymerase to mediate strand-displacement synthesis on duplex DNA. In vivo complementation studies reveal a requirement for a hydrophobic residue with long side chains at this position. In a crystal structure of T7 helicase, when a nucleotide is bound at a subunit interface, Phe(523) is buried within the interface. However, in the unbound state, it is more exposed on the outer surface of the helicase. This structural difference suggests that the β-hairpin bearing the Phe(523) may undergo a conformational change during nucleotide hydrolysis. We postulate that upon hydrolysis of dTTP, Phe(523) moves from within the subunit interface to a more exposed position where it contacts the displaced complementary strand and facilitates unwinding.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Bacteriophage T7 / enzymology*
  • Crystallography, X-Ray
  • DNA Primase / chemistry*
  • DNA Primase / metabolism
  • DNA, Viral / biosynthesis
  • DNA, Viral / chemistry*
  • Escherichia coli / enzymology
  • Escherichia coli / virology
  • Hydrolysis
  • Hydrophobic and Hydrophilic Interactions
  • Protein Structure, Secondary
  • Thymine Nucleotides / chemistry*
  • Thymine Nucleotides / metabolism
  • Viral Proteins / chemistry*
  • Viral Proteins / metabolism

Substances

  • DNA, Viral
  • Thymine Nucleotides
  • Viral Proteins
  • DNA Primase
  • thymidine 5'-triphosphate