Web tools for molecular epidemiology of tuberculosis

Infect Genet Evol. 2012 Jun;12(4):767-81. doi: 10.1016/j.meegid.2011.08.019. Epub 2011 Aug 28.


In this study we explore publicly available web tools designed to use molecular epidemiological data to extract information that can be employed for the effective tracking and control of tuberculosis (TB). The application of molecular methods for the epidemiology of TB complement traditional approaches used in public health. DNA fingerprinting methods are now routinely employed in TB surveillance programs and are primarily used to detect recent transmissions and in outbreak investigations. Here we present web tools that facilitate systematic analysis of Mycobacterium tuberculosis complex (MTBC) genotype information and provide a view of the genetic diversity in the MTBC population. These tools help answer questions about the characteristics of MTBC strains, such as their pathogenicity, virulence, immunogenicity, transmissibility, drug-resistance profiles and host-pathogen associativity. They provide an integrated platform for researchers to use molecular epidemiological data to address current challenges in the understanding of TB dynamics and the characteristics of MTBC.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • DNA Fingerprinting
  • DNA, Bacterial
  • Databases, Nucleic Acid
  • Genotype
  • Host-Pathogen Interactions
  • Humans
  • Internet
  • Management Information Systems
  • Minisatellite Repeats
  • Mutation
  • Mycobacterium tuberculosis / classification
  • Mycobacterium tuberculosis / genetics*
  • Phylogeny
  • Phylogeography
  • Polymorphism, Single Nucleotide
  • Software*
  • Tuberculosis / epidemiology
  • Tuberculosis / transmission


  • DNA, Bacterial