Amplified analysis of DNA by the autonomous assembly of polymers consisting of DNAzyme wires

J Am Chem Soc. 2011 Nov 2;133(43):17149-51. doi: 10.1021/ja2076789. Epub 2011 Oct 12.

Abstract

A systematic study of the amplified optical detection of DNA by Mg(2+)-dependent DNAzyme subunits is described. The use of two DNAzyme subunits and the respective fluorophore/quencher-modified substrate allows the detection of the target DNA with a sensitivity corresponding to 1 × 10(-9) M. The use of two functional hairpin structures that include the DNAzyme subunits in a caged, inactive configuration leads, in the presence of the target DNA, to the opening of one of the hairpins and to the activation of an autonomous cross-opening process of the two hairpins, which affords polymer DNA wires consisting of the Mg(2+)-dependent DNAzyme subunits. This amplification paradigm leads to the analysis of the target DNA with a sensitivity corresponding to 1 × 10(-14) M. The amplification mixture composed of the two hairpins can be implemented as a versatile sensing platform for analyzing any gene in the presence of the appropriate hairpin probe. This is exemplified with the detection of the BRCA1 oncogene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biocatalysis
  • DNA / analysis*
  • DNA, Catalytic / chemistry*
  • DNA, Catalytic / metabolism
  • Polymers / chemical synthesis*
  • Polymers / chemistry
  • Polymers / metabolism

Substances

  • DNA, Catalytic
  • Polymers
  • DNA