DNA methylation in inflammatory genes among children with obstructive sleep apnea

Am J Respir Crit Care Med. 2012 Feb 1;185(3):330-8. doi: 10.1164/rccm.201106-1026OC. Epub 2011 Nov 10.


Background: Pediatric obstructive sleep apnea (OSA) leads to multiple end-organ morbidities that are mediated by the cumulative burden of oxidative stress and inflammation. Because not all children with OSA exhibit increased systemic inflammation, genetic and environmental factors may be affecting patterns of DNA methylation in genes subserving inflammatory functions.

Methods: DNA from matched children with OSA with and without high levels of high-sensitivity C-reactive protein (hsCRP) were assessed for DNA methylation levels of 24 inflammatory-related genes. Primer-based polymerase chain reaction assays in a case-control setting involving 47 OSA cases and 31 control subjects were conducted to confirm the findings; hsCRP and myeloid-related protein (MRP) 8/14 levels were also assayed.

Measurements and main results: Forkhead box P3 (FOXP3) and interferon regulatory factor 1 (IRF1) showed higher methylation in six children with OSA and high hsCRP levels compared with matched children with OSA and low hsCRP levels (P < 0.05). In the case-control cohort, children with OSA and high CRP levels had higher log FOXP3 DNA methylation levels compared with children with OSA and low CRP levels and control subjects. IRF1 did not exhibit significant differences. FOXP3 DNA methylation levels correlated with hsCRP and MRP 8/14 levels and with apnea-hypopnea index (AHI), BMI z score, and apolipoprotein B levels. A stepwise multiple regression model showed that AHI was independently associated with FOXP3 DNA methylation levels (P < 0.03).

Conclusions: The FOXP3 gene, which regulates expression of T regulatory lymphocytes, is more likely to display increased methylation among children with OSA who exhibit increased systemic inflammatory responses. Thus, epigenetic modifications may constitute an important determinant of inflammatory phenotype in OSA, and FOXP3 DNA methylation levels may provide a potential biomarker for end-organ vulnerability.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • C-Reactive Protein / metabolism
  • Calgranulin A / blood
  • Calgranulin B / blood
  • Case-Control Studies
  • Child
  • Child, Preschool
  • DNA Methylation*
  • Female
  • Forkhead Transcription Factors / genetics*
  • Genetic Markers / genetics
  • Humans
  • Inflammation / blood
  • Inflammation / genetics*
  • Linear Models
  • Lipids / blood
  • Male
  • Multivariate Analysis
  • Polysomnography
  • Prospective Studies
  • Sequence Analysis, DNA
  • Sleep Apnea, Obstructive / blood
  • Sleep Apnea, Obstructive / genetics*


  • Calgranulin A
  • Calgranulin B
  • FOXP3 protein, human
  • Forkhead Transcription Factors
  • Genetic Markers
  • Lipids
  • C-Reactive Protein