Virtual Cell: computational tools for modeling in cell biology

Wiley Interdiscip Rev Syst Biol Med. Mar-Apr 2012;4(2):129-40. doi: 10.1002/wsbm.165. Epub 2011 Dec 2.

Abstract

The Virtual Cell (VCell) is a general computational framework for modeling physicochemical and electrophysiological processes in living cells. Developed by the National Resource for Cell Analysis and Modeling at the University of Connecticut Health Center, it provides automated tools for simulating a wide range of cellular phenomena in space and time, both deterministically and stochastically. These computational tools allow one to couple electrophysiology and reaction kinetics with transport mechanisms, such as diffusion and directed transport, and map them onto spatial domains of various shapes, including irregular three-dimensional geometries derived from experimental images. In this article, we review new robust computational tools recently deployed in VCell for treating spatially resolved models.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Cell Membrane / chemistry
  • Computational Biology
  • Computer Simulation
  • Models, Biological*
  • Software
  • User-Computer Interface