Actinoplanes atraurantiacus sp. nov., isolated from soil

Int J Syst Evol Microbiol. 2012 Oct;62(Pt 10):2533-2537. doi: 10.1099/ijs.0.037226-0. Epub 2011 Dec 16.

Abstract

A Gram-positive-staining bacterium, designated Y16(T), was isolated from a soil sample from Yunnan Province, China. The isolate grew optimally at 25-30 °C, grew at pH 6.0-9.0 and could grow with 3 % NaCl. Strain Y16(T) had cell-wall peptidoglycan based on meso-diaminopimelic acid. The predominant menaquinones were MK-9(H(4)) and MK-9(H(2)). The major fatty acid methyl esters were anteiso-C(15 : 0), iso-C(15 : 0), anteiso-C(17 : 0) and C(16 : 0). These chemotaxonomic characteristics suggested that the organism belonged to the genus Actinoplanes. Strain Y16(T) shared 98.7, 98.3 and 97.9 % 16S rRNA gene sequence similarity with Actinoplanes deccanensis IFO 13994(T), A. abujensis A4029(T) and A. brasiliensis DSM 43805(T), respectively. The DNA G+C content of the isolate was 70.8 mol%. DNA-DNA relatedness between the novel isolate and the type strains of A. deccanensis, A. abujensis and A. brasiliensis was 35.2, 32.0 and 22.3 %, respectively. In addition, the pattern of phenotypic properties distinguished strain Y16(T) from its closest phylogenetic neighbours. It is therefore concluded that strain Y16(T) ( = CGMCC 4.6857(T) = JCM 17700(T)) represents a novel species of the genus Actinoplanes, for which the name Actinoplanes atraurantiacus sp. nov. is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cell Wall / chemistry
  • China
  • DNA, Bacterial / genetics
  • Diaminopimelic Acid / analysis
  • Fatty Acids / analysis
  • Micromonosporaceae / classification*
  • Micromonosporaceae / genetics
  • Micromonosporaceae / isolation & purification
  • Molecular Sequence Data
  • Peptidoglycan / analysis
  • Phylogeny*
  • Sequence Analysis, DNA
  • Soil / analysis
  • Soil Microbiology*
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Peptidoglycan
  • Soil
  • Vitamin K 2
  • Diaminopimelic Acid

Associated data

  • GENBANK/HQ839788