New insights into the HCV quasispecies and compartmentalization

Semin Liver Dis. 2011 Nov;31(4):356-74. doi: 10.1055/s-0031-1297925. Epub 2011 Dec 21.


Hepatitis C virus (HCV) is a hepatotropic RNA virus with an extraordinary propensity to persist in the vast majority of infected individuals. During replication, because of the inherent infidelity of the viral RNA polymerase, each progeny RNA genome contains mutations that lead to a continuous diversification of the viral population. Consequently, HCV circulates in vivo as a quasispecies, which is a dynamic distribution of divergent but closely related genomes subjected to a continuous process of genetic variation, competition, and selection. This genomic heterogeneity confers a remarkable advantage to the viral population allowing for a rapid adaptation to a changing environment when the virus is subject to selective constraints exerted by the host, such as antiviral immunity, or external to the host, such as antiviral therapy. The large reservoir of variants provided by the quasispecies represents a great challenge for the control of HCV infection and has important biologic implications for viral persistence, host cell tropism, antiviral drug resistance, and development of an HCV vaccine. This review discusses the molecular mechanisms of HCV genetic variation and the biologic and clinical relevance of the quasispecies nature of HCV.

Publication types

  • Research Support, N.I.H., Intramural
  • Review

MeSH terms

  • Antigenic Variation / genetics
  • Consensus Sequence
  • Drug Resistance, Viral / genetics
  • Evolution, Molecular*
  • Genetic Heterogeneity
  • Hepacivirus / classification
  • Hepacivirus / genetics*
  • Hepacivirus / pathogenicity
  • Hepacivirus / physiology
  • Humans
  • Mutation
  • Mutation Rate
  • RNA, Viral
  • Viral Proteins / genetics


  • HVR1 protein, Hepatitis C virus
  • RNA, Viral
  • Viral Proteins