Artemis: An Integrated Platform for Visualization and Analysis of High-Throughput Sequence-Based Experimental Data

Bioinformatics. 2012 Feb 15;28(4):464-9. doi: 10.1093/bioinformatics/btr703. Epub 2011 Dec 22.

Abstract

Motivation: High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole transcriptome sequencing and genome-wide analysis of protein-bound nucleic acids.

Results: We present Artemis as a tool for integrated visualization and computational analysis of different types of HTS datasets in the context of a reference genome and its corresponding annotation.

Availability: Artemis is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute websites: http://www.sanger.ac.uk/resources/software/artemis/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genome
  • High-Throughput Nucleotide Sequencing
  • Molecular Sequence Annotation*
  • Software*
  • Transcriptome