Highly sensitive detection of protein with aptamer-based target-triggering two-stage amplification

Anal Chem. 2012 Feb 7;84(3):1623-9. doi: 10.1021/ac2029002. Epub 2012 Jan 24.

Abstract

Highly sensitive detection of proteins is essential to biomedical research as well as clinical diagnosis. However, so far most detection methods rely on antibody-based assays and are usually laborious and time-consuming with poor sensitivity. Here, we develop a simple and sensitive method for the detection of a biomarker protein, platelet-derived growth factor BB (PDGF-BB), based on aptamer-based target-triggering two-stage amplification. With the involvement of an aptamer-based probe and an exponential amplification reaction (EXPAR) template, our method combines strand displacement amplification (SDA) and EXPAR, transforming the probe conformational change induced by target binding into two-stage amplification and distinct fluorescence signal. This detection method exhibits excellent specificity and high sensitivity with a detection limit of 9.04 × 10(-13) M and a detection range of more than 5 orders of magnitude, which is comparable with or even superior to most currently used approaches for PDGF-BB detection. Moreover, this detection method has significant advantages of isothermal conditions required, simple and rapid without multiple separation and washing steps, low-cost without the need of any labeled DNA probes. Furthermore, this method might be extended to sensitive detection of a variety of biomolecules whose aptamers undergo similar conformational changes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aptamers, Nucleotide / chemistry*
  • Becaplermin
  • DNA Probes / chemistry
  • Fluorescent Dyes / chemistry
  • Nucleic Acid Amplification Techniques*
  • Proto-Oncogene Proteins c-sis / analysis*
  • Spectrometry, Fluorescence*

Substances

  • Aptamers, Nucleotide
  • DNA Probes
  • Fluorescent Dyes
  • Proto-Oncogene Proteins c-sis
  • Becaplermin