Alpinimonas psychrophila gen. nov., sp. nov., an actinobacterium of the family Microbacteriaceae isolated from alpine glacier cryoconite

Int J Syst Evol Microbiol. 2012 Nov;62(Pt 11):2724-2730. doi: 10.1099/ijs.0.036160-0. Epub 2012 Jan 6.

Abstract

A Gram-type positive, Gram-reaction variable, non-motile, psychrophilic actinobacterium, designated Cr8-25(T), was isolated from alpine glacier cryoconite and was able to grow well over a temperature range of 1-15 °C. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain Cr8-25(T) belonged to the family Microbacteriaceae and showed highest 16S rRNA gene sequence similarity with Klugiella xanthotipulae 44C3(T) (97.0%). However, strain Cr8-25(T) could be differentiated from the type strain of K. xanthotipulae on the level of genomospecies by a DNA-DNA relatedness value of only 37.2%. Strain Cr8-25(T) contained a cell-wall peptidoglycan that was cross-linked according to the B-type, which is based on 2,4-diaminobutyric acid. The cell wall contained the sugars galactose, fucose and rhamnose. The predominant cellular fatty acids of strain Cr8-25(T) were C(15:0) anteiso (64.6%) and iso-C(16:0) (22.5%) and the major menaquinones were MK-11 and MK-10. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and unknown glycolipids. The G+C content of the genomic DNA was 58.8 mol%. On the basis of the phenotypic characteristics, phylogenetic and chemotaxonomic analyses and DNA-DNA relatedness data, strain Cr8-25(T) represents a novel species of a new genus in the family Microbacteriaceae, for which the name Alpinimonas psychrophila gen. nov., sp. nov. is proposed. The type strain is Cr8-25(T) (=DSM 23737(T)=LMG 26215(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Austria
  • Bacterial Typing Techniques
  • Base Composition
  • Cell Wall / chemistry
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Ice Cover / microbiology*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Vitamin K 2

Associated data

  • GENBANK/AB012648
  • GENBANK/AB016985
  • GENBANK/AB028940
  • GENBANK/AB042094
  • GENBANK/AB282862
  • GENBANK/AB362159
  • GENBANK/AB378301
  • GENBANK/AF116342
  • GENBANK/AF159363
  • GENBANK/AF159364
  • GENBANK/AF224723
  • GENBANK/AF389342
  • GENBANK/AF539697
  • GENBANK/AJ306835
  • GENBANK/AJ310413
  • GENBANK/AJ310417
  • GENBANK/AJ459101
  • GENBANK/AJ717385
  • GENBANK/AJ717388
  • GENBANK/AJ781046
  • GENBANK/AJ781047
  • GENBANK/AM286414
  • GENBANK/AM494541
  • GENBANK/AY372075
  • GENBANK/DQ256087
  • GENBANK/DQ473536
  • GENBANK/DQ515963
  • GENBANK/DQ525859
  • GENBANK/DQ533552
  • GENBANK/EF373534
  • GENBANK/EF466126
  • GENBANK/EF467640
  • GENBANK/FJ527819
  • GENBANK/FM998017
  • GENBANK/FN432340
  • GENBANK/GQ496038
  • GENBANK/GU784868