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. 2012 Feb 8;30(2):135-7.
doi: 10.1038/nbt.2112.

PRIDE Inspector: a tool to visualize and validate MS proteomics data

Rui Wang, Antonio Fabregat, Daniel Ríos, David Ovelleiro, Joseph M Foster, Richard G Côté, Johannes Griss, Attila Csordas, Yasset Perez-Riverol, Florian Reisinger, Henning Hermjakob, Lennart Martens, Juan Antonio Vizcaíno

PRIDE Inspector: a tool to visualize and validate MS proteomics data

Rui Wang et al. Nat Biotechnol. .
No abstract available

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Figures

Figure 1
Figure 1
PRIDE Inspector helps to perform every stage of the PRIDE submission workflow. The workflow consists of four stages: 1. Data Production: Search engine output results are converted into PRIDE XML files using PRIDE Converter. Authors can then use the PRIDE Inspector to perform an initial assessment on data quality and check metadata annotation before submission to PRIDE. 2. Data Deposition: the submitted PRIDE XML files are reviewed by PRIDE’s in-house curators using the PRIDE Inspector. 3. PRIDE Acceptance: the submission is accepted by PRIDE and the data is kept private. Journal’s reviewers and editors can access these private PRIDE experiments using the PRIDE Inspector. 4. Journal Acceptance: the submission is made public in the PRIDE database after journal acceptance. Data miners can extract, download or view PRIDE experiments using the PRIDE Inspector.
Figure 2
Figure 2
Screenshots showing some of the graphical features of PRIDE Inspector: A) Section of the “Spectrum View’ tab, B) ‘Protein View’ tab including the ‘Spectrum Viewer’ showing MS/MS fragment ion annotations (only b ion annotations are shown), C) ‘Quantification View’ D) ‘Search PRIDE’ panel, E) ‘Number of Peptides Identified per Protein’ chart, and F) ‘Delta m/z’ chart.
See this image and copyright information in PMC

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