Genome-wide RNAi screen in IFN-γ-treated human macrophages identifies genes mediating resistance to the intracellular pathogen Francisella tularensis

PLoS One. 2012;7(2):e31752. doi: 10.1371/journal.pone.0031752. Epub 2012 Feb 16.

Abstract

Interferon-gamma (IFN-γ) inhibits intracellular replication of Francisella tularensis in human monocyte-derived macrophages (HMDM) and in mice, but the mechanisms of this protective effect are poorly characterized. We used genome-wide RNA interference (RNAi) screening in the human macrophage cell line THP-1 to identify genes that mediate the beneficial effects of IFN-γ on F. tularensis infection. A primary screen identified ∼200 replicated candidate genes. These were prioritized according to mRNA expression in IFN-γ-primed and F. tularensis-challenged macrophages. A panel of 20 top hits was further assessed by re-testing using individual shRNAs or siRNAs in THP-1 cells, HMDMs and primary human lung macrophages. Six of eight validated genes tested were also found to confer resistance to Listeria monocytogenes infection, suggesting a broadly shared host gene program for intracellular pathogens. The F. tularensis-validated hits included 'druggable' targets such as TNFRSF9, which encodes CD137. Treating HMDM with a blocking antibody to CD137 confirmed a beneficial role of CD137 in macrophage clearance of F. tularensis. These studies reveal a number of important mediators of IFN-γ activated host defense against intracellular pathogens, and implicate CD137 as a potential therapeutic target and regulator of macrophage interactions with Francisella tularensis.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cells, Cultured
  • Francisella tularensis / genetics
  • Francisella tularensis / immunology*
  • Genome, Human / immunology*
  • Genome-Wide Association Study*
  • Humans
  • Immunity / genetics*
  • Interferon-gamma / pharmacology*
  • Macrophages / drug effects
  • Macrophages / immunology
  • Macrophages / microbiology*
  • MicroRNAs / genetics
  • RNA Interference
  • Tumor Necrosis Factor Receptor Superfamily, Member 9

Substances

  • MicroRNAs
  • Tumor Necrosis Factor Receptor Superfamily, Member 9
  • Interferon-gamma