Pseudorhodoferax aquiterrae sp. nov., isolated from groundwater

Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):169-174. doi: 10.1099/ijs.0.039842-0. Epub 2012 Feb 24.

Abstract

A Gram-negative, rod-shaped, motile, non-spore-forming and poly-β-hydroxybutyrate-containing bacterial strain, designated NAFc-7(T), was isolated from groundwater in Taiwan and was characterized using a polyphasic taxonomic approach. Growth occurred at 15-40 °C (optimum, 30 °C), at pH 6.0-9.0 (optimum, pH 6.0-7.0) and with 0-3 % NaCl (optimum, 0-1 %). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain NAFc-7(T), together with Pseudorhodoferax soli TBEA3(T) (98.2 % sequence similarity) and Pseudorhodoferax caeni SB1(T) (98.0 %), formed a deep line within the family Comamonadaceae. Strain NAFc-7(T) contained summed feature 3 (comprising C(16 : 1)ω7c and/or C(16 : 1)ω6c), C(16 : 0) and C(17 : 0) cyclo as the predominant fatty acids. The major 3-hydroxy fatty acid was C(10 : 0) 3-OH. The major isoprenoid quinone was Q-8 and the DNA G+C content was 67.6 mol%. The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylserine and an uncharacterized phospholipid. The DNA-DNA relatedness of strain NAFc-7(T) with respect to recognized species of the genus Pseudorhodoferax was less than 70 %. On the basis of the genotypic, chemotaxonomic and phenotypic data, strain NAFc-7(T) represents a novel member of the genus Pseudorhodoferax, for which the name Pseudorhodoferax aquiterrae sp. nov. is proposed. The type strain is NAFc-7(T) (= BCRC 80210(T) = LMG 26333(T) = KCTC 23314(T)).

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Comamonadaceae / classification*
  • Comamonadaceae / genetics
  • Comamonadaceae / isolation & purification
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Groundwater / microbiology*
  • Hydroxybutyrates / analysis
  • Molecular Sequence Data
  • Phospholipids / analysis
  • Phylogeny*
  • Polyesters / analysis
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Taiwan
  • Water Microbiology*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Hydroxybutyrates
  • Phospholipids
  • Polyesters
  • Quinones
  • RNA, Ribosomal, 16S
  • poly-beta-hydroxybutyrate

Associated data

  • GENBANK/GU721026