G-quadruplex binding ligands: from naturally occurring to rationally designed molecules

Curr Pharm Des. 2012;18(14):1948-72. doi: 10.2174/138161212799958431.

Abstract

Guanine-rich nucleic acid sequences are known to form G-quadruplex - four-stranded DNA or RNA structures stabilized by an array of Hoogsteen hydrogen bonds. G-quadruplex structures are involved in the modulation of gene expression at the transcription and translation levels. Accordingly, G-quadruplexes are considered as novel therapeutic targets for anticancer drug development. In this review, the authors provide a brief, up-to-date summary of G-quadruplex binding ligands, including naturally occurring molecules, synthetic compounds, and molecules identified by computational database screening. The key structural motifs of G-quadruplex binding ligands, that is, an aromatic core and basic side chains, are addressed in the context of how these molecules interact with G-quadruplex. A better understanding of these interactions would facilitate the rational design of ligands selective for DNA or RNA G-quadruplex.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Acridines / pharmacology
  • Anthraquinones / pharmacology
  • Berberine / pharmacology
  • DNA / chemistry
  • Drug Design*
  • G-Quadruplexes*
  • Humans
  • Indole Alkaloids / pharmacology
  • Ligands
  • Oxazoles / pharmacology
  • Porphyrins / pharmacology
  • Quinolines / pharmacology
  • RNA / chemistry

Substances

  • Acridines
  • Anthraquinones
  • Indole Alkaloids
  • Ligands
  • Oxazoles
  • Porphyrins
  • Quinolines
  • telomestatin
  • Berberine
  • cryptolepine
  • RNA
  • DNA