Flavitalea gansuensis sp. nov., isolated from soil from an arid area, and emended descriptions of the genus Flavitalea and Flavitalea populi

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):490-495. doi: 10.1099/ijs.0.038455-0. Epub 2012 Apr 13.

Abstract

A gram-reaction-negative, rod-shaped, gliding and bright-yellow-pigmented bacterial strain, designated JCN-23(T), was isolated from a soil sample collected from an arid area in Gansu Province in north-west China, and characterized by using a polyphasic taxonomic approach. This isolate grew optimally at 30 °C and in the absence of NaCl. The only respiratory quinone was menaquinone-7 and the major cellular fatty acids were iso-C(15 : 0), iso-C(17 : 0) 3-OH, summed feature 9 (iso-C(17 : 1)ω9c and/or C(16 : 0) 10-methyl) and summed feature 3 (C(16 : 1)ω7c and/or C(16 : 1)ω6c). The only polyamine was homospermidine and the major polar lipid was phosphatidylethanolamine. The DNA G+C content was 47.1 mol%. Comparative 16S rRNA gene sequence analysis showed that strain JCN-23(T) was a member of the phylum Bacteroidetes, exhibiting the highest 16S rRNA gene sequence similarity to Flavitalea populi CCTCC AB 208255(T) (97.6 %). No other recognized bacterial species showed more than 93.4 % 16S rRNA gene sequence similarity to the novel isolate. DNA-DNA hybridization experiments showed a low level (26 %) of DNA-DNA relatedness between strain JCN-23(T) and F. populi CCTCC AB 208255(T). On the basis of the phenotypic and genotypic data and phylogenetic inference, strain JCN-23(T) is considered to represent a novel species of the genus Flavitalea, for which the name Flavitalea gansuensis sp. nov. is proposed. The type strain is JCN-23(T) ( = ACCC 05418(T) = KCTC 23071(T)). Emended descriptions of the genus Flavitalea and Flavitalea populi are also proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Bacteroidetes / classification*
  • Bacteroidetes / genetics
  • Bacteroidetes / isolation & purification
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phospholipids / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Spermidine / analysis
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • menaquinone 7
  • Spermidine

Associated data

  • GENBANK/GU295962