Stakelama sediminis sp. nov., isolated from tidal flat sediment

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):560-564. doi: 10.1099/ijs.0.039743-0. Epub 2012 Apr 20.

Abstract

A novel bacterial strain designated CJ70(T) was isolated from tidal flat sediment in Korea. A polyphasic approach was used to identify this strain taxonomically. The isolate was Gram-stain-negative, strictly aerobic, yellow-pigmented, rod-shaped and non-motile. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain CJ70(T) was related most closely to Stakelama pacifica JLT832(T) with 95.7 % similarity and formed an independent phyletic line from recognized species of the genus Sphingomonas, comprising a clade with Stakelama pacifica, which is the only recognized species of the genus Stakelama. The predominant cellular fatty acids of strain CJ70(T) were C(18 : 1)ω7c (60.0 %), C(16 : 0) (21.2 %) and C(14 : 0) 2-OH (5.8 %). The major isoprenoid quinone was ubiquinone-10. The G+C content of the genomic DNA was 61.4 mol%. The results obtained from this study suggested that strain CJ70(T) represents a novel species of the genus Stakelama, for which the name Stakelama sediminis sp. nov. is proposed. The type strain is CJ70(T) ( = KACC 16559(T) = JCM 18079(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids
  • Geologic Sediments / microbiology*
  • Molecular Sequence Data
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification
  • Ubiquinone / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • Ubiquinone Q2

Associated data

  • GENBANK/EU099873