Topography of a flexible ribonucleoprotein helix: protein-protein contacts in Sendai virus nucleocapsids

J Virol. 1979 Jun;30(3):701-10. doi: 10.1128/JVI.30.3.701-710.1979.

Abstract

Contacts among the three polypeptide species in the flexible helical nucleocapsids of a paramyxovirus were examined with bifunctional protein cross-linking reagents. Polypeptides L and P, minor components of Sendai virus nucleocapsids implicated in viral RNA polymerase activity, were efficiently cross-linked into large complexes, indicating that they enjoy abundant contacts with neighboring protein molecules in the helix. Less reactivity was found in the case of the major structural polypeptide, NP; about half of all molecules of NP formed large cross-linked complexes, most of the rest remaining as monomers along with a small proportion of homodimers and low-order oligomers. Marked heterogeneity in the cross-linking reactivity of NP molecules, which may reflect the conformational quasi-equivalence inherent in a flexible helix, was indicated by the production of several conformers of homodimers and other low-order oligomers of NP, and by failure of the kinetics of NP cross-linking to conform to a simple statistical model of random polmerization. The validity of the statistical model was shown by cross-linking experiments with the rigid helical virus, tobacco mosaic virus.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Capsid / metabolism*
  • Dimethyl Suberimidate / pharmacology
  • Molecular Weight
  • Parainfluenza Virus 1, Human / drug effects
  • Parainfluenza Virus 1, Human / metabolism
  • Parainfluenza Virus 1, Human / ultrastructure*
  • Peptides / analysis
  • Peptides / metabolism
  • Protein Conformation
  • RNA, Viral*
  • Viral Proteins* / analysis
  • Viral Proteins* / metabolism

Substances

  • Peptides
  • RNA, Viral
  • Viral Proteins
  • Dimethyl Suberimidate