The similarity index and DNA fingerprinting

Mol Biol Evol. 1990 Sep;7(5):478-84. doi: 10.1093/oxfordjournals.molbev.a040620.

Abstract

DNA-fingerprint similarity is being used increasingly to make inferences about levels of genetic variation within and between natural populations. It is shown that the similarity index--the average fraction of shared restriction fragments--provides upwardly biased estimates of population homozygosity but nearly unbiased estimates of the average identity-in-state for random pairs of individuals. A method is suggested for partitioning the DNA-fingerprint dissimilarity into within- and between-population components. Some simple expressions are given for the sampling variances of these estimators.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alleles
  • Biological Evolution*
  • DNA / chemistry*
  • DNA Fingerprinting*
  • Genetic Markers
  • Homozygote

Substances

  • Genetic Markers
  • DNA