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. 2012 Jun 28;9(7):635-7.
doi: 10.1038/nmeth.2097.

PhenoRipper: software for rapidly profiling microscopy images

Satwik Rajaram, Benjamin Pavie, Lani F Wu, Steven J Altschuler

PhenoRipper: software for rapidly profiling microscopy images

Satwik Rajaram et al. Nat Methods. .
No abstract available

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Figures

Figure 1
Figure 1
(a) Flow chart of analysis performed by PhenoRipper. (b) PhenoBrowser interface. Upper left: 3-D MDS plot of profiles for images of 3T3-L1 cells on different days of differentiation to adipocytes (days indicated by color). Right column: two selected images from day 15 (top) and 9 (bottom) (blue/green/yellow/red: DNA/lipid droplets/AdipoQ/PPARγ). Lower left: superblock features (lower left) that best distinguish the two selected images. (c) 2D MDS plot of PhenoRipper profiles for images of the 1820 “hits” from a genome-wide siRNA screen performed by Fuchs et al. Colors represent the six tightest phenotypic groups defined by Fuchs et al.; Class: 1-metaphase, 2-high-actin ratio, 3-lamellapodia + high-actin ratio, 4-proliferating cells, 5-small cells, 6-big cells, gray dots – other/unclassified. A.U.: arbitrary units.
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References

    1. Collins TJ. Biotechniques. 2007;43(1 Suppl):25–30. - PubMed
    1. Carpenter AE, et al. Genome Biol. 2006;7(10):R100. - PMC - PubMed
    1. Shamir L, Delaney JD, Orlov N, Eckley DM, Goldberg IG. Plos Computational Biology. 2010;6(11) - PMC - PubMed
    1. Huang K, Murphy RF. 2004 2nd Ieee International Symposium on Biomedical Imaging: Macro to Nano; 2004. pp. 1139–1142.
    1. Shamir L, et al. Source Code Biol Med. 2008;3:13. - PMC - PubMed

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