From cis-regulatory elements to complex RNPs and back

Cold Spring Harb Perspect Biol. 2012 Jul 1;4(7):a012245. doi: 10.1101/cshperspect.a012245.

Abstract

Messenger RNAs (mRNAs), the templates for translation, have evolved to harbor abundant cis-acting sequences that affect their posttranscriptional fates. These elements are frequently located in the untranslated regions and serve as binding sites for trans-acting factors, RNA-binding proteins, and/or small non-coding RNAs. This article provides a systematic synopsis of cis-acting elements, trans-acting factors, and the mechanisms by which they affect translation. It also highlights recent technical advances that have ushered in the era of transcriptome-wide studies of the ribonucleoprotein complexes formed by mRNAs and their trans-acting factors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Chromatography, Affinity
  • Gene Expression Regulation
  • Protein Biosynthesis
  • RNA, Messenger / genetics
  • Regulatory Sequences, Nucleic Acid*
  • Ribonucleoproteins / metabolism*
  • Untranslated Regions

Substances

  • RNA, Messenger
  • Ribonucleoproteins
  • Untranslated Regions