PNPLA3 polymorphisms and liver aminotransferase levels in a Mexican American population

Clin Invest Med. 2012 Aug 4;35(4):E237-45. doi: 10.25011/cim.v35i4.17153.


Purpose: This study examined genetic associations of patatin-like phospholipase domain containing 3 gene (PNPLA3) polymorphisms and liver aminotransferases in an extensively documented, randomly recruited Mexican American population at high risk of liver disease.

Methods: Two single nucleotide polymorphisms (SNP) in the PNPLA3 gene (i.e., rs738409 and rs2281135) were genotyped in 1532 individuals. Population stratification was corrected by the genotyping of 103 ancestry informative markers (AIMs) for Mexican Americans.

Results: Both PNPLA3 SNPs showed highly significant association with alanine aminotransferase (ALT) levels, but was also, in males, associated with aspartate aminotransferase (AST) levels. Haplotypic association test of the two SNPs suggested stronger genetic association with rs738409 than rs2281135. Obvious sex effects were observed: rs738409-sex interaction in ALT levels P = 8.37 x 10(-4); rs738409-sex interaction in AST levels P = 5.03 x 10(-3).

Conclusions: This population study highlights a sex-specific association of PNPLA3 polymorphisms and elevated liver enzymes in a population-based study, independent of common pathological factors of the metabolic syndrome. The strong genetic association found in women ≤ 50 years old, but not in women > 50 years old, suggests that sex hormones may mediate the sex effect.

Publication types

  • Randomized Controlled Trial
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Age Factors
  • Alanine Transaminase / genetics*
  • Alanine Transaminase / metabolism
  • Aspartate Aminotransferases / genetics
  • Aspartate Aminotransferases / metabolism*
  • Female
  • Genotype
  • Humans
  • Lipase / genetics*
  • Lipase / metabolism
  • Liver / metabolism
  • Liver Diseases / genetics*
  • Liver Diseases / metabolism
  • Male
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Metabolic Syndrome / genetics
  • Metabolic Syndrome / metabolism
  • Mexican Americans
  • Middle Aged
  • Polymorphism, Single Nucleotide*
  • Sex Characteristics*


  • Membrane Proteins
  • Aspartate Aminotransferases
  • Alanine Transaminase
  • Lipase
  • adiponutrin, human