Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.)

Theor Appl Genet. 2013 Jan;126(1):23-31. doi: 10.1007/s00122-012-1956-x. Epub 2012 Aug 14.


Cotton fiber fineness and maturity measured indirectly as micronaire (MIC) are important properties of determining fiber grades in the textile market. To understand the genetic control and molecular mechanisms of fiber fineness and maturity, we studied two near isogenic lines, Gossypium hirsutum, Texas Marker-1 wild type (TM-1) and immature fiber (im) mutant showing a significant difference in MIC values. The fibers from im mutant plants were finer and less mature with lower MIC values than those from the recurrent parent, TM-1. A comprehensive fiber property analysis of TM-1 and im mutant showed that the lower MIC of fibers in im mutant was due to the lower degree of fiber cell wall thickening as compared to the TM-1 fibers. Using an F(2) population comprising 366 progenies derived from a cross between TM-1 and im mutant, we confirmed that the immature fiber phenotype present in a mutant plant was controlled by one single recessive gene im. Furthermore, we identified 13 simple sequence repeat markers that were closely linked to the im gene located on chromosome 3. Molecular markers associated with the im gene will lay the foundation to further investigate genetic information required for improving cotton fiber fineness and maturity.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alleles
  • Base Sequence
  • Chromosome Mapping / methods
  • Chromosomes, Plant
  • Cotton Fiber
  • Crosses, Genetic
  • Genes, Plant
  • Genetic Linkage
  • Genetic Markers
  • Gossypium / genetics*
  • Gossypium / metabolism
  • Image Processing, Computer-Assisted
  • Models, Genetic
  • Models, Statistical
  • Molecular Sequence Data
  • Mutation
  • Phenotype
  • Sequence Analysis, DNA


  • Genetic Markers