Neptunomonas qingdaonensis sp. nov., isolated from intertidal sand

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1673-1677. doi: 10.1099/ijs.0.041970-0. Epub 2012 Aug 17.

Abstract

A Gram-negative, motile, aerobic, oxidase- and catalase-positive rod, designated P10-2-4(T), was isolated from an intertidal sand sample collected from a coastal area of Qingdao (Yellow Sea), China. The isolate reduced nitrate to nitrite and grew at 4-33 °C and with 0.5-12 % (w/v) NaCl. The predominant cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH), C18 : 1ω7c and C16 : 0. The major polar lipids were phosphatidylethanolamine and phosphatidylglycerol. The major respiratory quinone was Q-8. The genomic DNA G+C content was 45.1 %. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain P10-2-4(T) belonged to the genus Neptunomonas. The isolate shared the highest 16S rRNA gene sequence similarity (98.1 %) with Neptunomonas japonica JAMM 0745(T) and 96.9, 96.5 and 95.9 % sequence similarities with N. antarctica S3-22(T), N. concharum LHW37(T) and N. naphthovorans NAG-2N-126(T), respectively, strains of the other three recognized species in the genus. DNA-DNA relatedness between strain P10-2-4(T) and N. japonica JCM 14595(T) was 35.6 %. Furthermore, strain P10-2-4(T) could be distinguished from the representatives of the genus Neptunomonas by a combination of phenotypic characteristics, such as temperature and NaCl concentration for growth, nitrate reduction, DNase activity and assimilation of substrates. The data from this study suggests that strain P10-2-4(T) represents a novel species in the genus Neptunomonas, for which the name Neptunomonas qingdaonensis sp. nov. is proposed. The type strain is P10-2-4(T) ( = CGMCC 1.10971(T) = KCTC 23686(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oceanospirillaceae / classification*
  • Oceanospirillaceae / genetics
  • Oceanospirillaceae / isolation & purification
  • Phosphatidylethanolamines / analysis
  • Phosphatidylglycerols / analysis
  • Phylogeny*
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology
  • Sequence Analysis, DNA
  • Silicon Dioxide*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phosphatidylethanolamines
  • Phosphatidylglycerols
  • Quinones
  • RNA, Ribosomal, 16S
  • phosphatidylethanolamine
  • Silicon Dioxide

Associated data

  • GENBANK/JF747202