Factors governing helical preference of peptides containing multiple alpha,alpha-dialkyl amino acids

Proc Natl Acad Sci U S A. 1990 Jan;87(1):487-91. doi: 10.1073/pnas.87.1.487.

Abstract

The presence of multiple alpha,alpha-dialkyl amino acids such as alpha-methylalanine (alpha-aminoisobutyric acid, Aib) leads to predominantly helical structures, either with alpha-helical or 3(10)-helical hydrogen bonding patterns. The crystal structure of emerimicin-(1-9) benzyl ester (Ac-Phe-Aib-Aib-Aib-Val-Gly-Leu-Aib-Aib-OBzl) reported here shows essentially pure alpha-helical character, whereas other similar compounds show predominantly 3(10)-helical structures. The factors that govern helical preference include the inherent relative stability of the alpha-helix compared with the 3(10)-helix, the extra hydrogen bond seen with 3(10)-helices, and the enhanced electrostatic dipolar interaction of the 3(10)-helix when packed in a crystalline lattice. The balance of these forces, when combined with the steric requirements of the amino acid side chains, determines the relative stability of the two helical conformations under a given set of experimental conditions.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Aminobutyrates*
  • Models, Molecular
  • Molecular Sequence Data
  • Oligopeptides*
  • Peptide Fragments*
  • Protein Conformation*

Substances

  • Aminobutyrates
  • Oligopeptides
  • Peptide Fragments
  • emerimicin (1-9) benzyl ester
  • alpha-aminobutyric acid