Stochastic-shielding approximation of Markov chains and its application to efficiently simulate random ion-channel gating

Phys Rev Lett. 2012 Sep 14;109(11):118101. doi: 10.1103/PhysRevLett.109.118101. Epub 2012 Sep 11.

Abstract

Markov chains provide realistic models of numerous stochastic processes in nature. We demonstrate that in any Markov chain, the change in occupation number in state A is correlated to the change in occupation number in state B if and only if A and B are directly connected. This implies that if we are only interested in state A, fluctuations in B may be replaced with their mean if state B is not directly connected to A, which shortens computing time considerably. We show the accuracy and efficacy of our approximation theoretically and in simulations of stochastic ion-channel gating in neurons.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ion Channel Gating*
  • Markov Chains*
  • Models, Chemical
  • Models, Neurological
  • Models, Theoretical*
  • Stochastic Processes