Sphingobium fontiphilum sp. nov., isolated from a freshwater spring

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1906-1911. doi: 10.1099/ijs.0.046417-0. Epub 2012 Sep 28.

Abstract

To investigate the biodiversity of bacteria in the spring water of the Chengcing Lake Park in Taiwan, a Gram-stain-negative, rod-shaped, non-motile, non-spore-forming and aerobic bacterial strain, designated strain Chen16-4(T), was isolated and characterized in a taxonomic study using a polyphasic approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that the closest relatives of strain Chen16-4(T) were Sphingobium amiense YT(T), Sphingobium yanoikuyae GIFU 9882(T) and Sphingobium scionense WP01(T), with sequence similarities of 97.6, 97.1 and 97.0 %, respectively. A phylogenetic tree obtained with 16S rRNA gene sequences indicated that strain Chen16-4(T) and these three closest relatives formed an independent phylogenetic clade within the genus Sphingobium. The polar lipid pattern, the presence of spermidine and ubiquinone Q-10, the predominance of C18 : 1ω7c in the cellular fatty acid profile and the DNA G+C content also supported affiliation of the isolate to the genus Sphingobium. The DNA-DNA relatedness of strain Chen16-4(T) with respect to recognized species of the genus Sphingobium was less than 70 %. On the basis of the genotypic, chemotaxonomic and phenotypic data, strain Chen16-4(T) represents a novel species in the genus Sphingobium, for which the name Sphingobium fontiphilum sp. nov. is proposed. The type strain is Chen16-4(T) ( = BCRC 80308(T) = LMG 26342(T) = KCTC 23559(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Fresh Water / microbiology*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Spermidine / analysis
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification
  • Taiwan
  • Ubiquinone / analysis
  • Water Microbiology

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • Ubiquinone Q2
  • Spermidine

Associated data

  • GENBANK/HQ667767