KASpOD--a web service for highly specific and explorative oligonucleotide design

Bioinformatics. 2012 Dec 1;28(23):3161-2. doi: 10.1093/bioinformatics/bts597. Epub 2012 Oct 9.

Abstract

Summary: KASpOD is a web service dedicated to the design of signature sequences using a k-mer-based algorithm. Such highly specific and explorative oligonucleotides are then suitable for various goals, including Phylogenetic Oligonucleotide Arrays.

Availability: http://g2im.u-clermont1.fr/kaspod.

Contact: eric.peyretaillade@udamail.fr

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Cluster Analysis
  • Internet*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Oligonucleotide Probes / genetics
  • Software*

Substances

  • Oligonucleotide Probes