Sequence comparison of the phosphoprotein mRNAs of antigenic subgroups A and B of human respiratory syncytial virus identifies a highly divergent domain in the predicted protein

J Gen Virol. 1990 Feb:71 ( Pt 2):481-5. doi: 10.1099/0022-1317-71-2-481.

Abstract

The sequences of the P mRNA and protein of strain 18537 of antigenic subgroup B of human respiratory syncytial virus were determined by sequencing cloned cDNAs of intracellular mRNA. Comparison with the corresponding sequences of the A2 strain of subgroup A showed that there was extensive sequence identity at both the nucleotide (80% identity) and amino acid (90% identity) levels. The P proteins contained a single divergent region (52% amino acid identity) flanked by highly conserved domains (96% identity). The previously observed differences in electrophoretic mobilities between the P proteins of subgroup A strains and certain subgroup B strains could not be attributed to differences in the polypeptide Mr of the primary translation product.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Antigens, Viral / genetics
  • Base Sequence
  • Capsid / genetics*
  • Cloning, Molecular
  • DNA, Viral / genetics
  • HN Protein*
  • Humans
  • Molecular Sequence Data
  • Phosphoproteins / genetics*
  • RNA, Messenger / genetics*
  • RNA, Viral / genetics*
  • Respiratory Syncytial Viruses / genetics*
  • Respiratory Syncytial Viruses / immunology
  • Viral Core Proteins / genetics*
  • Viral Envelope Proteins
  • Viral Proteins*

Substances

  • Antigens, Viral
  • DNA, Viral
  • HN Protein
  • Phosphoproteins
  • RNA, Messenger
  • RNA, Viral
  • Viral Core Proteins
  • Viral Envelope Proteins
  • Viral Proteins
  • attachment protein G

Associated data

  • GENBANK/D00736