Comparative genomics and evolutionary diversification of the duplicated fabp6a and fabp6b genes in medaka and three-spined stickleback

Abstract

We describe the evolutionary diversification of the duplicated ileal fatty acid-binding protein genes (fabp6a and fabp6b) from Japanese ricefish (Oryzias latipes; medaka) and three-spined stickleback (Gasterosteus aculeatus). The fabp6a and fabp6b genes from medaka and three-spined stickleback encode polypeptides of 125-127 amino acids, which share highest sequence identity with their orthologs in teleost fishes and tetrapods. All Fabp6a and Fabp6b from different species cluster together in a distinct clade in phylogenetic analysis and the topology of the tree suggests that fabp6a and fabp6b from medaka and three-spined stickleback are most likely duplicated genes of an ancestral FABP6 owing to teleost-specific whole-genome duplication. However, the topology of an alternate phylogenetic tree revealed that the duplication of the ancestral FABP6 that gave rise to the extant fabp6a and fabp6b possibly occurred before the divergence of tetrapods and fishes. Conserved gene synteny was evident between the teleost fabp6a and fabp6b genes and the human FABP6 gene. The tissue-specific distribution of fabp6a transcripts suggests the retention of ancestral function(s) of the fabp6a gene in medaka and three-spined stickleback with acquisition of new function(s) in different tissues. However, the tissue-specific regulation of the fabp6b gene has diverged markedly in medaka and three-spined stickleback since the duplication of the fabp6 gene.