[Protein families specific for plastoms in small taxonomy groups of algae and protozoa]

Mol Biol (Mosk). Sep-Oct 2012;46(5):799-809.
[Article in Russian]

Abstract

Protein clustering is useful for refinement of protein annotation as well as cluster finding by its phylogenetic profile. We performed clustering of plastid encoded proteins from Rhodophyta as well as other plastid containing species related to Rhodophyta branch on species tree. Data base for cluster finding by its phylogenetic profile is available on http://lab6.iitp.ru/ppc/redline. By means of the database distinctive proteins for plastoms from small taxonomy groups of algae and protozoa were found. We performed finding and analysis of RNA polymerases encoded in Apicomplexa nuclei.

Publication types

  • English Abstract
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algal Proteins / genetics*
  • Algorithms
  • Amino Acid Sequence
  • Apicomplexa / classification
  • Apicomplexa / genetics*
  • Cell Nucleus / genetics
  • DNA-Directed RNA Polymerases / genetics*
  • Databases, Protein
  • Molecular Sequence Data
  • Multigene Family
  • Phylogeny
  • Plastids / genetics*
  • Protozoan Proteins / genetics*
  • Rhodophyta / classification
  • Rhodophyta / genetics*

Substances

  • Algal Proteins
  • Protozoan Proteins
  • DNA-Directed RNA Polymerases