Towards the creation of a visual ontology of biomedical imaging entities

AMIA Annu Symp Proc. 2012;2012:866-75. Epub 2012 Nov 3.


Image content is frequently the target of biomedical information extraction systems. However, the meaning of this content cannot be easily understood without some associated text. In order to improve the integration of textual and visual information, we are developing a visual ontology for biomedical image retrieval. Our visual ontology maps the appearance of image regions to concepts in an existing textual ontology, thereby inheriting relationships among the visual entities. Such a resource creates a bridge between the visual characteristics of important image regions and their semantic interpretation. We automatically populate our visual ontology by pairing image regions with their associated descriptions. To demonstrate the usefulness of this resource, we have developed a classification method that automatically labels image regions with appropriate concepts based solely on their appearance. Our results for thoracic imaging terms show that our methods are promising first steps towards the creation of a biomedical visual ontology.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Database Management Systems
  • Diagnostic Imaging* / classification
  • Information Storage and Retrieval*
  • Radiology Information Systems
  • Vocabulary, Controlled*