Loop-mediated isothermal amplification (LAMP)-based method for rapid mushroom species identification

J Agric Food Chem. 2013 Feb 27;61(8):1833-40. doi: 10.1021/jf304824b. Epub 2013 Feb 12.

Abstract

Toxic mushroom species, such as the death cap ( Amanita phalloides ), are responsible for most mushroom poisonings. In the present work, novel loop-mediated isothermal amplification (LAMP) assays were used for the differentiation of even closely related edible and toxic mushroom species. The applicability of these methods was tested by cross-reaction studies and analysis of spiked mushroom samples (raw and fried material). Contaminations at the level of 2% (w/w) could be detected in different mushroom blends. Three detection methods were used: agarose gel analysis, fluorimetric real-time detection, and visual detection by lateral flow dipsticks (LFD). The LAMP assay combined with LFD detection allows the identification of A. phalloides in about 2 h (including DNA extraction) at a very low level of technical equipment (micropestle, water bath, and mobile centrifuge), which makes this technique perfectly suited for on-site applications.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agaricales / classification*
  • Agaricales / genetics*
  • Mycological Typing Techniques / methods*
  • Nucleic Acid Amplification Techniques / methods*
  • Vegetables / classification*
  • Vegetables / genetics*