FOXA1 mediates p16(INK4a) activation during cellular senescence

EMBO J. 2013 Mar 20;32(6):858-73. doi: 10.1038/emboj.2013.35. Epub 2013 Feb 26.

Abstract

Mechanisms governing the transcription of p16(INK4a), one of the master regulators of cellular senescence, have been extensively studied. However, little is known about chromatin dynamics taking place at its promoter and distal enhancer. Here, we report that Forkhead box A1 protein (FOXA1) is significantly upregulated in both replicative and oncogene-induced senescence, and in turn activates transcription of p16(INK4a) through multiple mechanisms. In addition to acting as a classic sequence-specific transcriptional activator, FOXA1 binding leads to a decrease in nucleosome density at the p16(INK4a) promoter in senescent fibroblasts. Moreover, FOXA1, itself a direct target of Polycomb-mediated repression, antagonizes Polycomb function at the p16(INK4a) locus. Finally, a systematic survey of putative FOXA1 binding sites in the p16(INK4a) genomic region revealed an ∼150 kb distal element that could loop back to the promoter and potentiate p16(INK4a) expression. Overall, our findings establish several mechanisms by which FOXA1 controls p16(INK4a) expression during cellular senescence.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Age Factors
  • Animals
  • Base Sequence
  • Cellular Senescence / genetics*
  • Cluster Analysis
  • Cyclin-Dependent Kinase Inhibitor p16 / genetics*
  • Cyclin-Dependent Kinase Inhibitor p16 / metabolism
  • Gene Expression Profiling
  • HeLa Cells
  • Hepatocyte Nuclear Factor 3-alpha / genetics
  • Hepatocyte Nuclear Factor 3-alpha / metabolism
  • Hepatocyte Nuclear Factor 3-alpha / physiology*
  • Humans
  • Mice
  • Mice, Inbred BALB C
  • Microarray Analysis
  • Models, Biological
  • Transcriptional Activation / genetics

Substances

  • Cyclin-Dependent Kinase Inhibitor p16
  • FOXA1 protein, human
  • Hepatocyte Nuclear Factor 3-alpha