Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate

J Hum Genet. 2013 Jul;58(7):461-6. doi: 10.1038/jhg.2013.23. Epub 2013 Mar 28.

Abstract

Studies of multiple measures of a quantitative trait can have greater precision and thus statistical power compared with single-measure studies, but this has rarely been studied in the relation to quantitative trait measurement error models in genetic association studies. Using estimated glomerular filtration rate (eGFR), a quantitative measure of kidney function, as an example we constructed measurement error models of a quantitative trait with systematic and random error components. We then examined the effects on precision of the parameter estimate between genetic loci and eGFR, resulting from varying the correlation and contribution of the error components. We also compared the empirical results from three genome-wide association studies (GWAS) of kidney function in 9049 European Americans: a single measure model, a three-measure model of the same biomarker of kidney function and a six-measure model of different biomarkers of kidney function. Simulations showed that given the same amount of overall errors, inclusion of measures with less correlated systematic errors led to greater gain in precision. The empirical GWAS results confirmed that both the three- and six-measure models detected more eGFR-associated genomic loci with stronger statistical association than the single-measure model despite some heterogeneity among the measures. Multiple measures of a quantitative trait can increase the statistical power of a study without additional participant recruitment. However, careful attention must be paid to the correlation of systematic errors and inconsistent associations when different biomarkers or methods are used to measure the quantitative trait.

Publication types

  • Observational Study
  • Research Support, N.I.H., Extramural

MeSH terms

  • Biomarkers / metabolism
  • European Continental Ancestry Group / genetics
  • Genetic Association Studies / methods*
  • Glomerular Filtration Rate / genetics*
  • Glomerular Filtration Rate / physiology
  • Humans
  • Kidney / metabolism
  • Middle Aged
  • Phenotype*
  • Polymorphism, Single Nucleotide
  • Prospective Studies
  • Quantitative Trait Loci*

Substances

  • Biomarkers