The role of polymorphisms in host immune genes in determining the severity of respiratory illness caused by pandemic H1N1 influenza

Public Health Genomics. 2013;16(1-2):9-16. doi: 10.1159/000345937. Epub 2013 Mar 18.


Following the influenza epidemics, it has become clear that severity of illness is not uniform. Comorbidities and immunocompromise account for only a fraction of severe cases and do not explain the differential severity among the otherwise healthy during pandemics. During the 2009 H1N1 pandemic, a focus has been placed on better understanding of the determinants and pathogenesis of severe influenza infections. Much of the current literature has focused on viral genetics and its impact on host immunity as well as novel risk factors for severe infection (particularly within the H1N1 pandemic). The improved understanding of the cellular mechanisms and pathways involved in the pathogenesis of severe disease along with technological advances have allowed a more systematic approach to the exploration of the host genetic determinants of susceptibility and severe respiratory illness. By better defining the role of genetic variability in the immune responses to influenza, and identifying key polymorphisms that either protect against severe manifestation or those that impair the host immune response, it is possible to envision better methods to identify at-risk populations and new targets for therapeutic interventions and vaccines. This review will summarize the accumulated literature examining the immunogenetic factors associated with propensity for the development of severe pandemic H1N1 (pH1N1) manifestations. We will focus on novel and key insights gained through study of ethnic populations that appeared more vulnerable to severe disease during the 2009 H1N1 pandemic.

Publication types

  • Review

MeSH terms

  • Alleles
  • Animals
  • Ethnicity
  • Genetic Predisposition to Disease
  • Humans
  • Immunoglobulin G / genetics
  • Immunoglobulin G / immunology
  • Influenza A Virus, H1N1 Subtype*
  • Influenza, Human / genetics*
  • Influenza, Human / immunology*
  • Killer Cells, Natural / immunology
  • Pandemics
  • Polymorphism, Genetic*
  • Receptors, CCR5 / genetics
  • Receptors, CCR5 / immunology
  • Receptors, KIR / genetics
  • Receptors, KIR / immunology
  • Respiratory Tract Diseases / genetics*
  • Respiratory Tract Diseases / immunology*
  • Risk Factors
  • Severity of Illness Index
  • Vitamin D / immunology


  • Immunoglobulin G
  • Receptors, CCR5
  • Receptors, KIR
  • Vitamin D