The recent emergence of magnetic resonance (MR)-based neuroimaging techniques has dramatically improved researchers' ability to understand the neuropathology of alcoholism. These techniques range from those that directly monitor the metabolism and the biochemical and physiological effects (i.e., the pharmacodynamics) of alcohol within the brain to techniques that examine the impact of heavy alcohol use on brain structure and function. In general, MR-based techniques measure electromagnetic signals (the same type of signals detected by a radio antenna) generated by nuclei of endogenous molecules in the body of a person placed in a powerful magnet field. When influenced by a magnet, tissue itself transiently becomes magnetic. In part, this is because of the properties of atomic nuclei. Different MR-based techniques have been developed to utilize nuclear magnetism induced in tissue to generate images of internal structure. The most commonly used MR imaging (MRI) techniques rely on signals derived from hydrogen nuclei in water, which is by far the most concentrated molecular species in the body. The physical properties of water molecules vary from one region of tissue to another, and this influences the nuclear magnetism generated by water hydrogen nuclei. As a result, MRI can differentiate regions in soft tissue at a high level of detail. A second approach-MR spectroscopy (MRS)- uses the same strategy to detect electromagnetic signals, but they are derived from nuclei of atoms (hydrogen as well as some other atoms) on molecules other than water, such as lipids, amino acids, or even alcohol (i.e., ethanol). The resulting data on the molecule(s) under investigation can provide detailed information about the metabolic activity of various tissues, including the brain. The main advantage of MR-based techniques is that they do not expose the subject to radioactive tracers and therefore can be used repeatedly in the same subject, allowing researchers to track metabolic or structural changes over time. This article briefly summarizes how these techniques may be used to characterize the effects of alcohol dependence on the brain.