Direct interaction between the TnsA and TnsB subunits controls the heteromeric Tn7 transposase

Proc Natl Acad Sci U S A. 2013 May 28;110(22):E2038-45. doi: 10.1073/pnas.1305716110. Epub 2013 May 14.


The transposon Tn7 transposase that recognizes the transposon ends and mediates breakage and joining is heteromeric. It contains the Tn7-encoded proteins TnsB, which binds specifically to the transposon ends and carries out breakage and joining at the 3' ends, and TnsA, which carries out breakage at the 5' ends of Tn7. TnsA apparently does not bind specifically to DNA, and we have hypothesized that it is recruited to the ends by interaction with TnsB. In this work, we show that TnsA and TnsB interact directly and identify several TnsA and TnsB amino acids involved in this interaction. We also show that TnsA can stimulate two key activities of TnsB, specific binding to the ends and pairing of the Tn7 ends. The ends of Tn7 are structurally asymmetric (i.e., contain different numbers of TnsB-binding sites), and Tn7 also is functionally asymmetric, inserting into its specific target site, attachment site attTn7 (attTn7) in a single orientation. Moreover, Tn7 elements containing two Tn7 right ends can transpose, but elements with two Tn7 left ends cannot. We show here that TnsA + TnsB are unable to pair the ends of a Tn7 element containing two Tn7 left ends. This pairing defect likely contributes to the inability of Tn7 elements with two Tn7 left ends to transpose.

Keywords: asymmetric transposon ends; protein-DNA interaction; protein–protein interaction; transposition.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites / genetics
  • Blotting, Southern
  • Blotting, Western
  • DNA Primers / genetics
  • DNA Transposable Elements / genetics
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Electrophoresis, Polyacrylamide Gel
  • Electrophoretic Mobility Shift Assay
  • Escherichia coli
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Molecular Sequence Data
  • Mutation, Missense / genetics
  • Protein Subunits / genetics
  • Protein Subunits / metabolism*
  • Transposases / genetics
  • Transposases / metabolism*


  • DNA Primers
  • DNA Transposable Elements
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • Protein Subunits
  • TnsA protein, E coli
  • TnsB protein, E coli
  • Transposases