Development of quantitative real-time PCR primers for detecting 42 oral bacterial species

Arch Microbiol. 2013 Jul;195(7):473-82. doi: 10.1007/s00203-013-0896-4. Epub 2013 May 21.

Abstract

In this study, we introduced species-specific quantitative real-time PCR (qPCR) primers designed based on a DNA-dependent RNA polymerase beta-subunit gene (rpoB) for detecting 42 oral bacterial species. The specificity of the qPCR primers was confirmed by conventional PCR with the genomic DNAs of 73-79 strains regarding 73-75 bacterial species including the type strain for the target species. The standard curves revealed the lower detection limits of 42 bacterial species-specific qPCR primers ranged from 4 to 40 fg below a cycle threshold (C T) value of 35, except Atopobium rimae, Fusobacterium nucleatum, Neisseria meningitidis, and Porphyromonas asaccharolytica which were 400 fg. These results suggest that 42 bacterial species-specific qPCR primers are suitable for applications in epidemiological studies related to oral infectious diseases such as periodontal diseases, endodontic infection, and dental caries.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Bacteria / isolation & purification*
  • DNA Primers*
  • DNA, Bacterial / analysis
  • DNA, Bacterial / genetics
  • DNA-Directed RNA Polymerases / genetics
  • Humans
  • Mouth / microbiology*
  • Mouth Diseases / diagnosis
  • Mouth Diseases / microbiology
  • Polymerase Chain Reaction / methods
  • Real-Time Polymerase Chain Reaction
  • Sensitivity and Specificity

Substances

  • DNA Primers
  • DNA, Bacterial
  • DNA-Directed RNA Polymerases
  • RNA polymerase beta subunit