Optimizing complexity measures for FMRI data: algorithm, artifact, and sensitivity

PLoS One. 2013 May 21;8(5):e63448. doi: 10.1371/journal.pone.0063448. Print 2013.


Introduction: Complexity in the brain has been well-documented at both neuronal and hemodynamic scales, with increasing evidence supporting its use in sensitively differentiating between mental states and disorders. However, application of complexity measures to fMRI time-series, which are short, sparse, and have low signal/noise, requires careful modality-specific optimization.

Methods: HERE WE USE BOTH SIMULATED AND REAL DATA TO ADDRESS TWO FUNDAMENTAL ISSUES: choice of algorithm and degree/type of signal processing. Methods were evaluated with regard to resilience to acquisition artifacts common to fMRI as well as detection sensitivity. Detection sensitivity was quantified in terms of grey-white matter contrast and overlap with activation. We additionally investigated the variation of complexity with activation and emotional content, optimal task length, and the degree to which results scaled with scanner using the same paradigm with two 3T magnets made by different manufacturers. Methods for evaluating complexity were: power spectrum, structure function, wavelet decomposition, second derivative, rescaled range, Higuchi's estimate of fractal dimension, aggregated variance, and detrended fluctuation analysis. To permit direct comparison across methods, all results were normalized to Hurst exponents.

Results: Power-spectrum, Higuchi's fractal dimension, and generalized Hurst exponent based estimates were most successful by all criteria; the poorest-performing measures were wavelet, detrended fluctuation analysis, aggregated variance, and rescaled range.

Conclusions: Functional MRI data have artifacts that interact with complexity calculations in nontrivially distinct ways compared to other physiological data (such as EKG, EEG) for which these measures are typically used. Our results clearly demonstrate that decisions regarding choice of algorithm, signal processing, time-series length, and scanner have a significant impact on the reliability and sensitivity of complexity estimates.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms
  • Artifacts
  • Data Interpretation, Statistical
  • Female
  • Humans
  • Magnetic Resonance Imaging / methods*
  • Male
  • Principal Component Analysis
  • Reproducibility of Results
  • Sensitivity and Specificity

Grant support

This research was supported by the Office of Naval Research, Grant# N000140410051 (LRMP) and the National Science Foundation, Grant# 0954643 (LRMP). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.