A comparative study of the catalysis of peptide bond formation by oxide surfaces
- PMID: 23770974
- DOI: 10.1039/c3cp51282g
A comparative study of the catalysis of peptide bond formation by oxide surfaces
Abstract
It is well-known that amino acids deposited on some inorganic oxides undergo peptidic condensation. It is seldom realised however that a large diversity of behaviours can be observed in such systems. Here we use the apparently simple case of glycine-non-porous silica as a reference system, in which glycine (Gly) dimerisation to diketopiperazine (DKP) is easy to evidence, especially when using TG in combination with NMR. We then proceed to compare it with other AA deposited on the same support on the one hand, with Gly deposited on other mineral surfaces on the other hand. In a final section, we provide more detailed mechanistic information on the glycine condensation process on silica, including kinetic data and a (13)C solid-state NMR follow up of the species at various stages of thermal condensation. The best mechanism to rationalise these data involves a crucial step of isomerisation from zwitterion to neutral glycine, and the participation of several distinct types of surface sites probably consisting of silanol ensembles.
Similar articles
-
Adsorption and thermal condensation mechanisms of amino acids on oxide supports. 1. Glycine on silica.Langmuir. 2004 Feb 3;20(3):914-23. doi: 10.1021/la035336b. Langmuir. 2004. PMID: 15773123
-
Chemistry of aqueous silica nanoparticle surfaces and the mechanism of selective peptide adsorption.J Am Chem Soc. 2012 Apr 11;134(14):6244-56. doi: 10.1021/ja211307u. Epub 2012 Apr 3. J Am Chem Soc. 2012. PMID: 22435500
-
Formation of activated biomolecules by condensation on mineral surfaces--a comparison of peptide bond formation and phosphate condensation.Orig Life Evol Biosph. 2013 Oct;43(4-5):429-43. doi: 10.1007/s11084-013-9345-2. Epub 2013 Nov 26. Orig Life Evol Biosph. 2013. PMID: 24277128
-
Adsorption of cobalt species on the interface, which is developed between aqueous solution and metal oxides used for the preparation of supported catalysts: a critical review.Adv Colloid Interface Sci. 2004 Aug 31;110(3):97-120. doi: 10.1016/j.cis.2004.04.001. Adv Colloid Interface Sci. 2004. PMID: 15328060 Review.
-
Acid properties of solid acid catalysts characterized by solid-state 31P NMR of adsorbed phosphorous probe molecules.Phys Chem Chem Phys. 2011 Sep 7;13(33):14889-901. doi: 10.1039/c1cp20417c. Epub 2011 Jul 25. Phys Chem Chem Phys. 2011. PMID: 21785784 Review.
Cited by
-
Setting the geological scene for the origin of life and continuing open questions about its emergence.Front Astron Space Sci. 2023 Jan 5;9:1095701. doi: 10.3389/fspas.2022.1095701. Front Astron Space Sci. 2023. PMID: 38274407 Free PMC article.
-
Polypeptide Chain Growth Mechanisms and Secondary Structure Formation in Glycine Gas-Phase Deposition on Silica Surfaces.J Phys Chem B. 2023 Jan 26;127(3):673-684. doi: 10.1021/acs.jpcb.2c07382. Epub 2023 Jan 13. J Phys Chem B. 2023. PMID: 36637235 Free PMC article.
-
Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids.Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2212642119. doi: 10.1073/pnas.2212642119. Epub 2022 Oct 3. Proc Natl Acad Sci U S A. 2022. PMID: 36191178 Free PMC article.
-
Nano-pulsed discharge plasma-induced abiotic oligopeptide formation from diketopiperazine.Naturwissenschaften. 2022 Jun 10;109(4):33. doi: 10.1007/s00114-022-01803-y. Naturwissenschaften. 2022. PMID: 35687146
-
Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations.Int J Mol Sci. 2022 Apr 12;23(8):4252. doi: 10.3390/ijms23084252. Int J Mol Sci. 2022. PMID: 35457069 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous
