HLA typing by sequence-specific primers

Methods Mol Biol. 2013:1034:147-59. doi: 10.1007/978-1-62703-493-7_8.

Abstract

HLA typing by sequence-specific primers (PCR-SSP) is a commonly used technique in HLA typing in which multiple pairs of cis-located allele-specific primers are used to determine the alleles present in a given DNA sample. Although the technique is around two decades old, it still offers a relatively straight forward way of typing and has the benefit of using commonly available laboratory equipment. Here we describe the background of the PCR-SSP, how to design and validate reactions, and common problems that arise.

MeSH terms

  • Alleles
  • Base Sequence
  • DNA Primers / genetics
  • Genotype
  • HLA Antigens / genetics
  • HLA Antigens / immunology*
  • Histocompatibility Testing / methods*
  • Humans
  • Molecular Biology / methods*
  • Polymerase Chain Reaction / methods*

Substances

  • DNA Primers
  • HLA Antigens